Index

_

_value (fastachar.fasta_logic.Char attribute) (fastachar.fasta_logic.State attribute)

A

about_window() (fastachar.tkgui.Gui method) Alignment (class in fastachar.fasta_io)

alignment (fastachar.tkgui.Gui attribute) are_sequences_of_equal_lengths() (fastachar.fasta_io.Alignment method)

C

Case (class in fastachar.tkgui) case (fastachar.tkgui.Gui attribute) cb_about() (fastachar.tkgui.Gui method) cb_b1_motion_lb() (fastachar.tkgui.Gui method) cb_b1_release_lb() (fastachar.tkgui.Gui method) cb_close_regex() (fastachar.tkgui.Gui method) cb_clr() (fastachar.tkgui.Gui method) cb_help() (fastachar.tkgui.Gui method) cb_open_case_file() (fastachar.tkgui.Gui method) cb_open_fasta_file() (fastachar.tkgui.Gui method) cb_open_fasta_file_for_hdr() (fastachar.tkgui.Gui method) cb_open_text_window() (fastachar.tkgui.Gui method) cb_reset() (fastachar.tkgui.Gui method) cb_run() (fastachar.tkgui.Gui method) cb_save_case_file() (fastachar.tkgui.Gui method)

cb_save_report() (fastachar.tkgui.Gui method) cb_save_report_xls() (fastachar.tkgui.Gui method) cb_set_regex() (fastachar.tkgui.Gui method) cb_set_working_dir() (fastachar.tkgui.Gui method) Char (class in fastachar.fasta_logic) clear() (fastachar.fasta_io.ReportXLS method) (fastachar.tkgui.Case method) compute_mdcs() (fastachar.fasta_logic.SequenceLogic method) config (fastachar.tkgui.ConfigFastachar attribute) (fastachar.tkgui.Gui attribute) CONFIG (in module fastachar.tkgui) ConfigFastachar (class in fastachar.tkgui) create_bindings() (fastachar.tkgui.Gui method) create_layout() (fastachar.tkgui.Gui method) create_menu() (fastachar.tkgui.Gui method) cwd (fastachar.tkgui.Gui attribute)

D

data (fastachar.tkgui.Case attribute)

DEFAULT (in module fastachar.tkgui) define_styles() (fastachar.fasta_io.ReportXLS method)

E

error_window() (fastachar.tkgui.Gui method)

F

fastachar (module) fastachar.fasta_doc (module) fastachar.fasta_io (module)

fastachar.fasta_logic (module) fastachar.tkgui (module) filename (fastachar.fasta_io.Report attribute)

G

generate_regex_dict() (fastachar.fasta_io.Alignment method) get_home() (fastachar.tkgui.ConfigFastachar method) get_masked_positions() (fastachar.fasta_logic.Sequence method) get_path() (fastachar.tkgui.ConfigFastachar method)

get_species_info() (fastachar.fasta_io.Alignment method) get_species_list() (fastachar.fasta_io.Alignment method) getcwd() (fastachar.tkgui.Gui method) Gui (class in fastachar.tkgui)

H

help_window() (fastachar.tkgui.Gui method)

I

intersection_of_subsets() (fastachar.fasta_logic.State method)

is_masked() (fastachar.fasta_logic.Char property) IUPAC (fastachar.fasta_logic.Char attribute)

L

LIST_KWDS (fastachar.tkgui.Case attribute) list_non_unique_characters_in_set() (fastachar.fasta_logic.SequenceLogic method) list_unique_characters_in_set() (fastachar.fasta_logic.SequenceLogic method)

load() (fastachar.fasta_io.Alignment method) (fastachar.tkgui.Case method) (fastachar.tkgui.ConfigFastachar method)

M

main() (in module fastachar.tkgui) mark_unit_length_states_within_set() (fastachar.fasta_logic.SequenceLogic method)

move_items() (fastachar.tkgui.Gui method) MyWorkbook (class in fastachar.fasta_io)

O

open_case_file() (fastachar.tkgui.Gui method)

open_fasta_file() (fastachar.tkgui.Gui method) output_filename (fastachar.fasta_io.Report attribute)

P

parse_hdr() (fastachar.fasta_io.Alignment method) parse_line() (fastachar.tkgui.Case method)

PATTERNS (fastachar.fasta_logic.Sequence attribute) populate() (fastachar.tkgui.Case method) populate_list_with_items() (fastachar.tkgui.Gui method)

R

release_in_listbox() (fastachar.tkgui.Gui method) remove_all_sheets() (fastachar.fasta_io.MyWorkbook method) Report (class in fastachar.fasta_io) report_footer() (fastachar.fasta_io.Report method) (fastachar.fasta_io.ReportXLS method) report_header() (fastachar.fasta_io.Report method) (fastachar.fasta_io.ReportXLS method) report_mdcs() (fastachar.fasta_io.Report method) (fastachar.fasta_io.ReportXLS method)

report_mdcs_summary() (fastachar.fasta_io.ReportXLS method) report_nucs() (fastachar.fasta_io.Report method) (fastachar.fasta_io.ReportXLS method) ReportXLS (class in fastachar.fasta_io) reportxls (fastachar.fasta_io.Report attribute) (fastachar.tkgui.Gui attribute) root (fastachar.tkgui.Gui attribute)

S

save() (fastachar.fasta_io.ReportXLS method) (fastachar.tkgui.Case method) (fastachar.tkgui.ConfigFastachar method) select_sequences() (fastachar.fasta_io.Alignment method) select_sequences_from_list() (fastachar.fasta_io.Alignment method) select_two_sequence_sets() (fastachar.fasta_io.Alignment method)

Sequence (class in fastachar.fasta_logic) SequenceLogic (class in fastachar.fasta_logic) set_defaults() (fastachar.tkgui.ConfigFastachar method) set_fasta_hdr_fmt() (fastachar.fasta_io.Alignment method) setcwd() (fastachar.tkgui.Gui method) State (class in fastachar.fasta_logic) state() (fastachar.fasta_logic.State property)

U

update() (fastachar.fasta_logic.State method)